Adjust the barcode size
For the item barcode, it can be resized by copying app/design/frontend/base/default/template/fooman/pdfcustomiser/item.phtml to your theme.
Change the 35 and 13 numbers below (those refer to the barcode width and height respectively:
$barcodeParams = $this->serializeParams(<br> array(<br> $pdfItem['productDetails']['Sku'], $this->getPdfHelper()->getBarcodeType(), '', '', '35', '13')<br>
For the order barcode, please disable it from the backend and modify app/design/frontend/base/default/template/fooman/pdfcustomiser/order/top.phtml or app/design/frontend/base/default/template/fooman/pdfcustomiser/order/top-alt.phtml
Uncomment the barcode to display it again and change the size as needed.